"A remarkable international effort to map out the avian tree of life has revealed how birds evolved after the mass extinction that wiped out the dinosaurs into more than 10,000 species alive today. More than 200 scientists in 20 countries joined forces to create the evolutionary tree, which reveals how birds gained their colourful feathers, lost their teeth, and learned to sing songs." Via iO9.
Harvard University and XVIVO have come together again (Previouslyw/ a commercial focus, Previouslierw/an Academic focus) to add to the growing series of scientific animations for BioVisions -- Harvard's multimedia lab in the department of Molecular and Cellular Biology. 'Protein Packing' strives to more accurately depict the molecular chaos in each and every cell, with proteins jittering around in what may seem like random motion. Proteins occupy roughly 40% of the cytoplasm, creating an environment that risks unintentional interaction and aggregation. Via diffusion and motor protein transport, these molecules are directed to sites where they are needed.
Much of this is no doubt inspired by the beautiful art and explained illustrations of David Goodsell, a biologist at Scripps who has been accurately portraying the crowdedness of the cellular landscape for a long time now.[more inside]
Monsanto Is Going Organic in a Quest for the Perfect Veggie - "The lettuce, peppers, and broccoli—plus a melon and an onion, with a watermelon soon to follow—aren't genetically modified at all. Monsanto created all these veggies using good old-fashioned crossbreeding, the same technology that farmers have been using to optimize crops for millennia. That doesn't mean they are low tech, exactly. Stark's division is drawing on Monsanto's accumulated scientific know-how to create vegetables that have all the advantages of genetically modified organisms without any of the Frankenfoods ick factor." [more inside]
The Mammoth Cometh. "Bringing extinct animals back to life is really happening — and it’s going to be very, very cool. Unless it ends up being very, very bad." [Previously, Via]
The selfish gene is one of the most successful science metaphors ever invented. Unfortunately, it’s wrong.
"I sent this paper to JK Rowling explaining how the wizarding gene could be singular, autosomal, and dominant despite the protests of a bunch of fans who stopped learning genetics after Punnett squares." See also: Wizarding Genetics: More Complicated Than Mendel! and Purple Orchids and Muggleborn Wizards: A Theory of Wizard Genetics
Is Psychometric g a Myth? - "As an online discussion about IQ or general intelligence grows longer, the probability of someone linking to statistician Cosma Shalizi's essay g, a Statistical Myth approaches 1. Usually the link is accompanied by an assertion to the effect that Shalizi offers a definitive refutation of the concept of general mental ability, or psychometric g." [more inside]
"Older parenthood will upend American society." "Is waiting to have kids a big mistake?" "Why do women believe they can delay children for so long?" "Older men are more likely than young ones to father a child who develops autism or schizophrenia, because of random mutations that become more numerous with advancing paternal age."
Hacking the President’s DNA. "The U.S. government is surreptitiously collecting the DNA of world leaders, and is reportedly protecting that of Barack Obama. Decoded, these genetic blueprints could provide compromising information. In the not-too-distant future, they may provide something more as well—the basis for the creation of personalized bioweapons that could take down a president and leave no trace."
When looking for inspiration, most songwriters to go well-used emotional wells – triumph or loss, love or heartbreak. But Peter Larsen, a biologist at Argonne National Laboratory, looked to the microbes of the English Channel. He used seven years’ worth of genetic and environmental data, converting geochemical and microbial abundance measurements into notes, beats, and chords.
With the possible exception of the Nobel awards, physicists seem to get all the press these days, whether they're doing quantum level work at the LHC, or cosmology via the latest satellite data. Biologists, not so much. It's too bad, because Richard Lenski is running one of the great evolutionary experiments of our time, and it's producing interesting results. [more inside]
In 2001, we learned the sequence of our genome; now, we have amassed a vast amount of knowledge about what those sequences actually do. Yesterday, the data from the ENCODE project went live. [more inside]
Just as Dante found it easier to conjure the pains of Hell than to evoke the joys of Heaven, so too do bioethicists find it easier to concoct the possible perils of a biotech-nanotech-infotech future than to appreciate how enhancements will contribute to flourishing lives. One of the chief goals of this symposium is to think about the indispensable role that virtue plays in human life. The chief motivating concern seems to be the fear that biotechnologies and other human enhancement technologies will somehow undermine human virtue. As we will see, far from undermining virtue, biotech, nanotech, and infotech enhancements will tend to support virtue; that is, they will help enable people to be actually good.
How can we better understand the interplay of nature and nurture in determining our personalities, behavior, and vulnerability to disease? Perhaps we should be looking at identical twins. (National Geographic January 2012 cover story) [more inside]
Split Family Faces. "How much do you and members of your family really look alike? Quebec, Canada-based graphic designer and photographer Ulric Collette has created a shockingly cool project where he's exploring the genetic similarities between different members of the same family. By splitting their faces in half and then melding them together, he creates interesting new people that are sometimes quite normal looking and other times far from it. He calls this series Genetic Portraits."
Larry Gonick is a veteran American cartoonist best known for his delightful comic-book guides to science and history, many of which have previews online. Chief among them is his long-running Cartoon History of the Universe (later The Cartoon History of the Modern World), a sprawling multi-volume opus documenting everything from the Big Bang to the Bush administration. Published over the course of three decades, it takes a truly global view -- its time-traveling Professor thoroughly explores not only familiar topics like Rome and World War II but the oft-neglected stories of Asia and Africa, blending caricature and myth with careful scholarship (cited by fun illustrated bibliographies) and tackling even the most obscure events with intelligence and wit. This savvy satire carried over to Gonick's Zinn-by-way-of-Pogo chronicle The Cartoon History of the United States, along with a bevy of Cartoon Guides to other topics, including Genetics, Computer Science, Chemistry, Physics, Statistics, The Environment, and (yes!) Sex. Gonick has also maintained a few sideprojects, such as a webcomic look at Chinese invention, assorted math comics (previously), the Muse magazine mainstay Kokopelli & Co. (featuring the shenanigans of his "New Muses"), and more. See also these lengthy interview snippets, linked previously. Want more? Amazon links to the complete oeuvre inside! [more inside]
Could the three established domains of life - eukaryotes, bacteria and archaea - be joined by a fourth?
The Price of Altruism - George Price, a (troubled) father of group selection thru his discovery of the eponymous Price Equation, has a rather interesting biography... [more inside]
New Adventures in Recent Evolution - In the last few years, biologists peering into the human genome have found evidence of recent natural selection. cf. Social Darwinism: 21st century edition [previously] (via ip) [more inside]
Tibetans May Be Fastest Evolutionary Adapters Ever. "A group of scientists in China, Denmark and the U.S. recently documented the fastest genetic change observed in humans. According to their findings, Tibetan adaption to high altitude might have taken just 3,000 years. That's a flash, in terms of evolutionary time, but it's one that's in dispute."
Followup to this post: A US District Court has ruled that Myriad Genetic's patents on breast cancer genes BRCA1 and BRCA2, which allow them to hold exclusive rights to a widely used genetic test for inherited breast and ovarian cancer susceptibility, are invalid. Genomics Law Report analyzes the ruling in two posts. The decision is likely to be challenged in a legal appeal — but if upheld, it could have huge implications for the biotechnology industry. [more inside]
A new study suggests that humanity's sense of fair play and kindness towards strangers is determined by culture, not genetics. Speculation: the finding may be directly related to the rise of religion in human history, as well as more complex economies. (Via). [more inside]
We may soon be able to clone Neanderthals. But should we? An essay from Archaeology Magazine examines the ethical, scientific and legal ramifications. (Via Heather Pringle's Time Machine blog, where essay author Zach Zorich posted a reply and elicited a response.) [more inside]
Cracking the Cancer Code: We already know that all cancers are caused by DNA mutations acquired during a person's lifetime. But what mutations actually cause cancer? We may be one step closer to finding out. International research teams led by the Cancer Genome Project at the Wellcome Trust Sanger Institute have now mapped the entire genetic code of two of the most common human cancers: lung and skin (malignant melanoma). Their findings have the potential to revolutionize preventative and treatment therapies as well as pave the way for new early detection tests. More. [more inside]
"Algae is the ultimate biological system using sunlight to capture and convert carbon dioxide into fuel... I came up with a notion to trick algae into pumping more [fuel] out." Craig Venter's Synthetic Genomics partners with ExxonMobil in a $600M project to harvest biofuels from genetically engineered algae. "We have modest goals of replacing the whole petrochemical industry." [previously] [more inside]
The Village Dog Project is an ongoing research project to document genetic diversity in pariah dogs. These dogs haven't been subject to breed pressure, and may be able to help researchers learn more about the transition from wolf to dog. (via)
"In Massachusetts, a young woman makes genetically modified E. coli in a closet she converted into a home lab. A part-time DJ in Berkeley, Calif., works in his attic to cultivate viruses extracted from sewage. In Seattle, a grad-school dropout wants to breed algae in a personal biology lab. These hobbyists represent a growing strain of geekdom known as biohacking, in which do-it-yourselfers tinker with the building blocks of life in the comfort of their own homes." They might be discovering cures for diseases or developing new biofuels, but are their experiments too risky? Via. [more inside]
On behalf of medical organizations, universities, & individual patients, pathologists and genetics researchers, the ACLU has filed a lawsuit against Utah-based Myriad Genetics and the US Patent and Trademark Office. Myriad holds the US patents to the BRCA1 and BRCA2 genes, associated with hereditary causes of breast and ovarian cancers. Their patents guarantee the company the right to prevent anyone else from testing or studying those genes, which the ACLU says is unconstitutional and inhibits researchers from finding treatments and cures. [more inside]
My Genome, My Self: Steven Pinker considers what we can expect from personal genomics. Searching for Intelligence in Our Genes: Carl Zimmer looks at the hunt to learn about the role of genes in intelligence.
Now: The Rest of the Genome. "Only 1 percent of the genome is made up of classic genes. Scientists are exploring the other 99 percent and uncovering new secrets and new questions."
How We Evolve: "A growing number of scientists argue that human culture itself has become the foremost agent of biological change, making us — for the past 10,000 years or so — the inadvertent architects of our own future selves." [more inside]
Scientists Repurpose Adult Cells - "Scientists have transformed one type of fully developed adult cell directly into another inside a living animal, a startling advance that could lead to cures for a variety of illnesses and sidestep the political and ethical quagmires associated with embryonic stem cell research." [nature abstract, nature writeup, audio announcement]
The first ever, it is believed, has been produced at Cornell University. The feat was apparently much overlooked, and has many concerned over the lack of public debate of this field of research. Genetically modified human embryos.
A new round of genetic tests has confirmed it: The 'big lizards' of our childhood fantasies were more likely 'big birds.' In fact, they probably even had feathers, and looked more like this than this. Mind blowing, I know, but I guess this demonstrates that, despite what some may think, science really doesn't have a problem admitting that it got something wrong when new evidence comes to light.
Any admixture would have to be driven by male Neanderthals. Two years ago we discussed morphological evidence of nontrivial interbreeding. Since then Neanderthal DNA has been examined for genetic support for this model of human evolution, largely contradicting the belief in Neanderthal contribution to modern humanity. Indeed any contribution from the Neanderthal gene pool to the evolution of modern humans might be very rare and indeed it appears that the best candidate gene thus (MC1R) far likely was a result of convergent evolution. [more inside]
'Race' graphically illustrated - "most Europeans" vs. Ashkenazim (previously; see also IQ & Gladwell, viz. ;) [more inside]
Devil facial tumor disease has ravaged the population of Tasmanian Devils in the last decade. DFTD is a transmissible cancer, i.e. the tumor cells themselves (which differ genetically from their host animal) are the agent responsible. The disease is spread by biting and other contact, and the resulting grotesque tumors interfere with feeding and lead to starvation. Poor immune response may be partially responsible. This is actually not the only such disease: canine transmissible venereal tumor is an analogue that has been known to be contagious since the 19th century. (CTVT, however, gets a proper immune response.) [more inside]
More cuckoo than cuckoos: mate two salmon, get a... trout! Just give the parents a sperm transplant. And the sperm stem cells work in females too:
...Injecting the male cells into female salmon sometimes worked, too, prompting five female salmon to ovulate trout eggs.... The stem cells were still primitive enough to switch gears from sperm-producers to egg-producers when they wound up inside female organs....
U.S. military practices genetic discrimination in denying benefits. "Those medically discharged with genetic diseases are left without disability or retirement benefits. Some are fighting back."
"Nothing in biology makes sense except in light of evolution." Despite Theodosius Dobzhansky's succint description of natural selection at the core of biological research since Darwin's fateful trip to the Galapagos, evolutionary biologist Michael Lynch respectfully dissents, asking "whether natural selection is a necessary or sufficient force to explain" the complexity of multicellular organisms we see today, where mutation, recombination and genetic drift are often overlooked, but critical factors in evolutionary theory and understanding.
Neanderthal Lovin’! New research from evolutionary scientist Bruce Lahn suggests that humans and the now extinct Neanderthal species mixed, and humans snatched up a valuable brain gene in the process. (The gene, MCPH1, and Lahn, discussed last year on MeFi) This comes on the tails of yet another new study providing morphological evidence that there was nontrivial interbreeding between humans and Neanderthals in Eurasia, despite the fact that Neanderthals may have been genetically closer to chimps than humans. Contrary to popular imagination, though, the Neanderthal species had bigger brains and sophisticated intellects, at least roughly on par with that of human beings. The gene regulates brain size during development, but its exact utility to humans is still unknown (and controversial). The origin of this gene and the question of Neanderthal mixing will soon be answered more definitively by the, just launched, 2 year project to map the Neanderthal genome, headed by Svante Pääbo (profiled in recent Smithsonian and Wired articles). Pääbo calls Lahn’s study "the most compelling case to date for a genetic contribution of Neandertals to modern humans."
Genes Reveal Recent Human Brain Evolution. Two important new papers in the journal Science (available here) from the evolutionary geneticist and rising star, Bruce T. Lahn (see this recent profile from The Scientist), are potentially the tips of some very large icebergs. The papers document how two genes related to brain properties that underwent strong selection during the course of hominid evolution, have continued undergoing strong selection since the emergence of anatomically modern man. The papers wonderfully illustrate how biological evolution is an ongoing process as well as the artificial distinction between “micro” and “macro” evolution, and promise to be controversial for two reasons: First, the brain genes underwent the strongest selection during two periods of cultural and technological efflorescence (roughly 37,000 and 5,800 years ago). Second, the genes are distributed very differently in modern human population groups, existing at very high frequencies in some groups and being very rare in others, ensuring that the modern function of these genes will be a source of more research and much impassioned debate. More observations from anthropologist John Hawks.
A more efficient microbe genome. A more efficient sorting algorithm. A more efficient keyboard layout.
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