The U.S. House has appointed SOPA architect and climate change skeptic Lamar Smith (R-TX) to chair the House Science Committee. His initial proposal (pdf) would strip the peer-review requirement from the NSF grant process and restrict grants to “groundbreaking” research. [more inside]
"Is organic produce better for you?" is a simple question asked by a middle schooler in a science fair. Using fruit flies fed organic vs. conventional produce, Ria Chhabra tracked the flies and saw improvements based on their diet. Now barely a sophomore in high school, the project lead to university research labs, science fair awards, publication in top-tier peer-reviewed journals, and quite likely, scholarships at her pick of top-flight universities.
Is Psychometric g a Myth? - "As an online discussion about IQ or general intelligence grows longer, the probability of someone linking to statistician Cosma Shalizi's essay g, a Statistical Myth approaches 1. Usually the link is accompanied by an assertion to the effect that Shalizi offers a definitive refutation of the concept of general mental ability, or psychometric g." [more inside]
Artist/designer Shepard Fairey was commissioned the Center For The Advancement Of Science In Space to design a brand new patch for the International Space Station's ARK 1 (Advancing Researching Knowledge) mission. CASIS's Pat O'Neill unveiling the patch and the ARK 1 proposal.
NeuroBollocks: Debunking pseudo-neuroscience so you don't have to.
Science & the City is the public gateway to the New York Academy of Sciences. We publish a comprehensive calendar of public science events in New York City, host events featuring top scientists in their fields, and produce a weekly podcast covering cutting-edge science. Meanwhile, the American Museum of Natural History presents over 200 public programs each year including workshops, seminars, lectures, cultural events, and performances. Museum lectures are presented by scientists, authors, and researchers at the forefront of their fields. These engaging sessions often reveal the findings of the Museum's own cutting-edge research in genomics, paleontology, astrophysics, biodiversity, and evolutionary biology and complement the science behind the Museum's world-famous cultural and scientific halls and special exhibitions. Now many are available in podcast form. [more inside]
Science Fiction Comes Alive as Researchers Grow Organs in Lab
1997 -- Charles Vacanti of University of Massachusetts Medical Center and Robert Langer of Massachusetts Institute of Technology report the growing of a cartilage structure – in the shape of a human ear – on a mouse’s back. 2008 -- Doris Taylor at the University of Minnesota and colleagues grow a beating rat heart in the lab. 2008 --Surgeons in Spain transplant a new windpipe into a patient. The organ is made from a cadaver windpipe stripped of its original cells and reseeded with the patient’s own cells. 2010 -- Researchers at Mass General Hospital grow a rat liver. 2010 -- Yale University scientists grow a functioning rat lung. 2010 -- Alex Seifalian in London transplants a lab-made tear duct into patient 2011 -- Dr. Seifalian makes a windpipe from nanocomposite materials plus a patient’s own stem cells; the new windpipe replaces the patient’s cancerous one, saving his life. In a separate procedure, an artery made at Dr. Seifalian’s lab is transplanted into a patient. 2012 -- Surgeons in Sweden transplant a major blood vessel into a 10-year-old girl. The vein was taken from a dead man, stripped of its tissue, then reseeded with the girl’s own cells. 2013 -- Scientists from Cornell University report the making of a human ear using living cartilage cells.
What do 3D printing, jelly, liver transplants, chainmail, dental fillings, ferrofluids, and the Six Million Dollar man have to tell us about our future? Materials scientist and engineer Mark Miodownik lets us know in this Royal Institution lecture.
Why the bacteria in food like yogurt may be the answer to anxiety and depression. Probiotic-rich food is good for your gut, but it may also be good for your brain, say researchers.
Using computer systems for doing mathematical proofs - "With the proliferation of computer-assisted proofs that are all but impossible to check by hand, Hales thinks computers must become the judge." [more inside]
The Department of Defense recently announced the creation of the Minerva Research Initiative (PDF), also known as Project Minerva, providing as much as $75 million over five years to support social science research on areas of strategic importance to U.S. national security policy. The initiative indicates a renewal of interest in social science findings after a prolonged period of neglect, but it also prompts concerns about the appropriate relationship between university-based research programs and the state, especially when research might become a tool of not only governance but also military violence. The Social Science Research Council (SSRC) has invited prominent scholars to speak to the questions raised by Project Minerva and to address the controversy it has sparked in academic quarters.
"In a long-awaited leap forward for open access, the US government said today that publications from taxpayer-funded research should be made free to read after a year’s delay – expanding a policy which until now has only applied to biomedical science." [more inside]
Sick Papes on Allometric Scaling of Metabolism, Growth, and Activity in Whole Colonies of the Seed‐Harvester Ant Pogonomyrmex californicus: “Dudes have been flubberbusting long and hard about whether we should think about the bees in a hive (or people in a city, or dicks in a game of dick jenga) as a wonderful communion of separate beings or as all just the dangly bits of one MegaMan. As the disturbing old saying goes, there’s many ways to skin a cat, but what perverted shitbag wants to skin a cat a bunch of different ways? So the world was on the verge of turning its back forever on this age old question and exploding in a supernova of its own ignorance. That is until some brave souls (Dr. James Waters and colleagues) figured out the illest of ways to blow the lid off a part of this problem. But let me slow my roll a bit and fill in the rubbly background that makes it crystalline just why this pape is so sick…” [more inside]
A documentary film about Norman Borlaug, the Iowa farm boy who saved over a billion people from starvation. (1:06:47) Americans have little knowledge of one of their greatest sons. Why do schoolchildren in China, India, Mexico, and Pakistan know the name and work of Nobel Peace Prize winner [His speech] Norman Borlaug while so few of his countrymen have never heard of him? How did a dirt-poor farm boy from rural Iowa grow up to save a billion people worldwide from starvation and malnutrition and become the father of the Green Revolution? What were the inherited traits and environmental factors that shaped his astonishing journey and led to successes that surprised even him? What can we learn from his life and views that might help the human race survive the next critical century? [more inside]
First noticed on tumblr but now available to all, Alex Clayden's paper "Same-Sex Desire in Pharaonic Egypt" which, among other things, tells you about the connection between lettuce and semen and the Ancient Egyptian for "You have a nice ass."
International aid projects come under the microscope Clinical-research techniques deployed to assess effectiveness of aid initiatives.
This week the FDA announced that they were approving a new kind of flu vaccine. Nestled in the articles was an odd fact: unlike traditional flu vaccines, the new kind, called Flublok, is produced by the cells of insects. This is the kind of detail that you might skim over without giving it a thought. If you did pause to ponder, you might be puzzled: how could insects possibly make a vaccine against viruses that infect humans? The answer may surprise you. To make vaccines, scientists are tapping into a battle between viruses and insects that’s raging in forests and fields and backyards all around us. It’s an important lesson in how to find new ideas in biotechnology: first, leave biologists free to explore the weirdest corners of nature they can find. [more inside]
Group selection, which was once widely rejected as a significant evolutionary force, is now accepted by all who seriously study the subject. There is still widespread confusion about group selection, however, not only among students and the general public, but among professional evolutionists who do not directly study the subject. We list eight criticisms that are frequently invoked against group selection, which can be permanently laid to rest based upon current knowledge. Experts will always find something to critique about group selection, as for any important subject, but these eight criticisms are not among them. Laying them to rest will enable authors to openly use the term group selection without being handicapped during the review process. [HTML], [PDF]
Why You Won’t Be the Person You Expect to Be (NYT): "When we remember our past selves, they seem quite different. We know how much our personalities and tastes have changed over the years. But when we look ahead, somehow we expect ourselves to stay the same... They called this phenomenon the “end of history illusion,” in which people tend to “underestimate how much they will change in the future.”" (via exp.lore) [more inside]
The Norovirus: A Study in Puked Perfection, "Each norovirus carries just nine protein-coding genes (you have about 20,000). Even with that skimpy genetic toolkit, noroviruses can break the locks on our cells, slip in, and hack our own DNA to make new noroviruses. The details of this invasion are sketchy, alas, because scientists haven’t figured out a good way to rear noroviruses in human cells in their labs. It’s not even clear exactly which type of cell they invade once they reach the gut. Regardless of the type, they clearly know how to exploit their hosts. Noroviruses come roaring out of the infected cells in vast numbers. And then they come roaring out of the body. Within a day of infection, noroviruses have rewired our digestive system so that stuff comes flying out from both ends." [more inside]
Association of Coffee Drinking with Total and Cause-Specific Mortality [FULL TEXT HTML]: "We used data from a very large study, the National Institutes of Health (NIH)–AARP Diet and Health Study (ClinicalTrials.gov number, NCT00340015), to determine whether coffee consumption is associated with total or cause-specific mortality. The current analysis, involving more than 400,000 participants and 52,000 deaths, had ample power to detect even modest associations and allowed for subgroup analyses according to important baseline factors, including the presence or absence of adiposity and diabetes, as well as cigarette-smoking status." [more inside]
Deciphering the Tools of Nature’s Zombies: The ability of parasites to alter the behaviour of their hosts fascinates both scientists and non-scientists alike. One reason that this topic resonates with so many is that it touches on core philosophical issues such as the existence of free will. If the mind is merely a machine, then it can be controlled by any entity that understands the code and has access to the machinery. This special issue of The Journal of Experimental Biology highlights some of the best-understood examples of parasite-induced changes in host brain and behaviour, encompassing both invertebrate and vertebrate hosts and micro- and macro-parasites. Full issue annotated inside: [more inside]
The simulated brain - "First computer model to produce complex behaviour performs almost as well as humans at simple number tasks." [1,2,3,4,5,etc.]
Why People Really Love Technology: An Interview with Genevieve Bell The thing I love about Intel researcher Genevieve Bell is that she finds surprising things by looking at what's left out of the dominant narratives about technology. She finds data that's ignored because it didn't fit into the paradigm of, say, how people adopt technology. The dominant narrative is that young men determine the popularity of phones, computers, websites, and the like. But when Bell looked at the data, the story we told ourselves about how the world worked was not reflected in the numbers. That's why I wanted to talk to her about what gadgets people around the world might be using over the next decade. I figured she was someone who could look past the conventional wisdom and find the missing pieces of the future
In just a few weeks single-celled yeast have evolved into a multicellular organism, complete with division of labour between cells. This suggests that the evolutionary leap to multicellularity may be a surprisingly small hurdle. More from Scientific American blogs. [Full Text PDF of the Publication of Note] [more inside]
What's Wrong With Online Reading, a slide presentation by Randy Connolly, argues that the relatively recent and increasingly popular approach to reading and learning - on computers, tablets and smartphones instead of traditional print - influences what and how we read, research and think, with disturbing consequences.
What we currently call breast cancer should be thought of as 10 completely separate diseases, according to an international study which has been described as a "landmark". The categories could improve treatment by tailoring drugs for a patient's exact type of breast cancer and help predict survival more accurately. The study in Nature analysed breast cancers from 2,000 women [Abstract] . It will take at least three years for the findings to be used in hospitals. [more inside]
Ask the very old on Ikaria how they managed to live past 90, and they’ll usually talk about the clean air and the wine. Or, as one 101-year-old woman put it to me with a shrug, “We just forget to die.” The reality is they have no idea how they got to be so old. And neither do we. [more inside]
One of the many problems farmers of various kinds of legumes need to deal with is the pea aphid. They reproduce incredibly fast and live by sucking the sap out of the plants, an electron micrograph of one in action. However, while they are terrifying parasites of legumes, they have their own yet more horrific parasites, a parasitoid wasp. Here is a really nice close up picture of one doing its thing, a video of the act, and here is a brain meltingly horrific video of a dissection of the mummified aftermath 8 days later. Essentially, these wasps deposit their eggs in a pea aphid and the growing larva feeds on it, developing there for about a week, and then consuming the host from the inside out like a Xenomorph. When it’s done, the wasp larva dries the aphid’s cuticle into a papery brittle shell and an adult wasp emerges from the aphid mummy. Legume farmers love them, and you can even order their mummies online these days. However, farmers noticed that the wasps didn't work as effectively on all of the aphids, and so researchers went to work figuring out why. It turns out that all aphids have a primary bacterial endosymbiont living inside their cells, in addition to and just like a mitochondria, and that many have some combination of five other secondary endosymbionts. Interestingly, two of those other five, Hamiltonella defensa and Serratia symbiotica have been shown to confer varying levels of resistance to the parasitoid wasp, allowing the aphid to survive infection. However, it turns out that there is yet one more layer to this story, [more inside]
The Puzzle of Plastid Evolution: A comprehensive understanding of the origin and spread of plastids remains an important yet elusive goal in the field of eukaryotic evolution. Combined with the discovery of new photosynthetic and non-photosynthetic protist lineages, the results of recent taxonomically broad phylogenomic studies suggest that a re-shuffling of higher-level eukaryote systematics is in order. Consequently, new models of plastid evolution involving ancient secondary and tertiary endosymbioses are needed to explain the full spectrum of photosynthetic eukaryotes. [Full Text HTML] [Full Text PDF] [more inside]
Mitigating Mutational Meltdown in Mammalian Mitochondria PLoS Biol 6(2): e35. [The PDF, where you can read the paper in its much prettier intended format.]
Mitochondria are remarkable microorganisms. About two billion years ago, their distant free-living ancestors hooked up with a truly foreign lineage of archaebacteria and started a genomic merger that led to the most successful coevolved mutualism on the planet: the eukaryotic cell. Along the way, evolving mitochondria lost a lot of genomic baggage, entrusted their emerging hosts with their own replication, sorted out genomic conflicts by following maternal inheritance, and have mostly abstained from sex and recombination. What mitochondria did retain was a subset of genes that encode critical components of the electron transport chain and ATP synthesis enzymes that carry out oxidative phosphorylation. Because mitochondria house the biochemical machinery that requires us to breathe oxygen, it was first assumed that mitochondrial genes would show very slow rates of molecular evolution. So it was big news almost 30 years ago when mitochondrial DNA (mtDNA) evolution was observed to be quite rapid . How could the genes for a highly conserved and critical function sustain the consequences of high mutation pressure and permit rapid rates of nucleotide substitution between species? Without the benefits of recombination, where offspring can carry fewer mutations than either parent, mutations should accumulate in mitochondrial genomes through the random loss of less-mutated genomes, a process referred to as Muller's ratchet [2,3]. How have mitochondria avoided a mutational meltdown, or at least significant declines in fitness?Here is a jaw droppingly beautiful 3D animation of what Mitochindria look like in action. [more inside]
Constitutive formation of caveolae in a bacterium. [Full Text]
Caveolin plays an essential role in the formation of characteristic surface pits, caveolae, which cover the surface of many animal cells. The fundamental principles of caveola formation are only slowly emerging. Here we show that caveolin expression in a prokaryotic host lacking any intracellular membrane system drives the formation of cytoplasmic vesicles containing polymeric caveolin. Vesicle formation is induced by expression of wild-type caveolins, but not caveolin mutants defective in caveola formation in mammalian systems. In addition, cryoelectron tomography shows that the induced membrane domains are equivalent in size and caveolin density to native caveolae and reveals a possible polyhedral arrangement of caveolin oligomers. The caveolin-induced vesicles or heterologous caveolae (h-caveolae) form by budding in from the cytoplasmic membrane, generating a membrane domain with distinct lipid composition. Periplasmic solutes are encapsulated in the budding h-caveola, and purified h-caveolae can be tailored to be targeted to specific cells of interest.Elio Schaechter writes in plain English about how fantastically amazing and unexpected the researchers actually pulling this off is, and he also talks about it in more detail in his podcast.
Provirophages and transpovirons as the diverse mobilome of giant viruses
Abstract: A distinct class of infectious agents, the virophages1 that infect giant viruses of the Mimiviridae family, has been recently described. Here we report the simultaneous discovery of a giant virus of Acanthamoeba polyphaga (Lentille virus) that contains an integrated genome2 of a virophage (Sputnik 2), and a member of a previously unknown class of mobile genetic elements3, the transpovirons4. The transpovirons are linear DNA elements of ∼7 kb [kilobases]5 that encompass six to eight protein-coding genes, two of which are homologous6 to virophage genes. Fluorescence7 in situ hybridization8 showed that the free form of the transpoviron replicates within the giant virus factory and accumulates in high copy numbers inside giant virus particles, Sputnik 2 particles, and amoeba cytoplasm. Analysis of deep-sequencing data showed that the virophage and the transpoviron can integrate9 in nearly any place in the chromosome of the giant virus host and that, although less frequently, the transpoviron can also be linked to the virophage chromosome. In addition, integrated fragments of transpoviron DNA were detected in several giant virus and Sputnik genomes. Analysis of 19 Mimivirus strains revealed three distinct transpovirons associated with three subgroups of Mimiviruses. The virophage, the transpoviron, and the previously identified self-splicing introns10 and inteins11 constitute the complex, interconnected mobilome12 of the giant viruses and are likely to substantially contribute to interviral gene transfer.[Full Text PDF] and two explanations in English [more inside]
You can accurately judge a person just by looking at their shoes, psychologists say. "Researchers at the University of Kansas found that people were able to correctly judge a stranger's age, gender, income, political affiliation, emotional and other important personality traits just by looking at the person's shoes." Virginia Postrel responded: "The study made a solid contribution to research on first impressions, but it was hardly earthshaking. By getting so much attention, however, it demonstrated a sociological truth: People love to talk about shoes. Even those who dismissed the research as silly often felt compelled to call radio stations or comment on websites, providing details about their own choices. Why this fascination with footwear? " [more inside]
Oldest message in a bottle found. The bottle was released as part of a research project tracking deep ocean currents. (Via socimages, via boingboing.)
Researchers from Carnegie Mellon have created what they are calling "acoustic barcodes". These barcodes can be decoded by a computer with a microphone attached, and their video presents several potential use cases including an interactive whiteboard, cell phone mode controls, and children's toys.
Two elements: tempo and volume. Researchers at the Sundance Research Facility have finally discovered how to turn sound into matter.
You're about to be the base doctor at Halley Research Station in Antarctica for a year. For ten months, no one gets in or out. Fourteen lives are in your hands, including your own. What do you put in your medical kit? And how do your choices differ from those of your predecessors (Eric Marshall and Edward Wilson) a century ago?
The Power of Kawaii: Viewing Cute Images Promotes a Careful Behavior and Narrows Attentional Focus This is interpreted as the result of a narrowed attentional focus induced by the cuteness-triggered positive emotion that is associated with approach motivation and the tendency toward systematic processing.
Why did one newspaper, in a story copied by several other UK newspapers, somewhat underestimate the number of adult cod in the North Sea by a factor of...
The drugs don't work : a modern medical scandal - "The doctors prescribing the drugs don't know they don't do what they're meant to. Nor do their patients. The manufacturers know full well, but they're not telling."
The Sponsor Effect: Breaking through the Last Glass Ceiling (pdf) Women aren't making it to the top. Despite gains in middle and senior management, they hold just 3 percent of Fortune 500 CEO positions. In the C-suite, they're outnumbered four to one. What's keeping women under the glass ceiling? High-performing women simply don't have the sponsorship they need to reach the top. The study found that women underestimate the role sponsorship plays in their advancement. And those who do grasp its importance fail to cultivate it. It's also a classic catch-22: a woman's personal choices, whatever they may be, brand her as not quite leadership material. What will it take to promote sponsorship?
A documentary by Adam Curtis on Henrietta Lacks and HeLa cell line created from her cells. Previously. Previously.
Have you ever wondered what the water temperature off the Kamchatka Peninsula is? What about the wind speed in the Andaman Sea? Or maybe you’re losing sleep over the chlorophyll levels in the South Pacific. Fortunately, all of that information –- and 450 million other data points collected from oceanographic instruments around the world –- is freely and easily accessible thanks to the Marinexplore project. [more inside]
There are fewer microbes out there than you think. New estimate reduces the number of microbes on Earth by around half. [more inside]